CMAP_2_Entrez
Status: Complete
Testing Directory . . .
Results: PASS
Testing Configuration File . . .
✅ config.yaml contains all necessary configurations.
✅ Title is less than 100 characters
✅ description.md contains a description.
Results: PASS
Running Install . . .
Executing install.sh: Success
Results: PASS
Testing file paths:
✅ test_data.tsv exists.
✅ test_metadata.tsv exists.
✅ download.sh exists.
✅ install.sh exists.
✅ parse.sh exists.
✅ cleanup.sh exists.
✅ description.md exists.
✅ config.yaml exists.
Running user code . . .
Executing download.sh: Success
Executing parse.sh: Success
✅ data.tsv.gz was created and zipped correctly.
✅ metadata.tsv.gz was created and zipped correctly.
Results: PASS
Testing Key Files:
✅ test_data.tsv contains enough unique samples to test
✅ test_data.tsv contains enough test cases (8; min: 8)
✅ test_metadata.tsv contains enough unique samples to test
✅ test_metadata.tsv contains enough test cases (18; min: 8)
Results: PASS
First 5 columns and 5 rows of data.tsv.gz:
| Sample | AKT3 | MED6 | NR2E3 | NAALAD2 |
|---|---|---|---|---|
| 5202764005791175120104.E08 | -0.07604248 | 1.0043152 | -0.06929116 | -0.19717948 |
| 5202764005791175120104.E10 | -0.11460035 | 1.28248579 | -0.03530519 | -0.1545126 |
| 5202764005791175120104.E11 | -0.09928488 | 1.29957722 | -0.0648402 | -0.11181129 |
| 5202764005791175120104.E12 | -0.10193789 | 1.23273062 | -0.05491299 | -0.10846203 |
Columns: 12081 Rows: 7057
“data.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
Results: PASS
First 3 columns and 5 rows of metadata.tsv.gz:
| Sample | Variable | Value |
|---|---|---|
| 5202764005791175120104.E08 | Perturbagen | vorinostat |
| 5202764005791175120104.E08 | Concentration | 0.00001 |
| 5202764005791175120104.E08 | Cell Line Name | MCF7 |
| 5202764005791175120104.E08 | Batch | 506 |
Columns: 3 Rows: 34325
“metadata.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
✅ Row 10: Success
✅ Row 11: Success
✅ Row 12: Success
✅ Row 13: Success
✅ Row 14: Success
✅ Row 15: Success
✅ Row 16: Success
✅ Row 17: Success
✅ Row 18: Success
Results: PASS
Comparing samples in both files . . .
✅ Samples are the same in both “data.tsv.gz” & “metadata.tsv.gz”