GSE62944_Normal_FeatureCounts
Status: Complete
Testing Directory . . .
Results: PASS
Testing Configuration File . . .
✅ config.yaml contains all necessary configurations.
✅ Title is less than 300 characters
✅ description.md contains a description.
Results: PASS
Running Install . . .
Executing install.sh: Success
Results: PASS
Testing file paths:
✅ test_data.tsv exists.
✅ test_metadata.tsv exists.
✅ download.sh exists.
✅ install.sh exists.
✅ parse.sh exists.
✅ cleanup.sh exists.
✅ description.md exists.
✅ config.yaml exists.
Running user code . . .
Executing download.sh: Success
Executing parse.sh: Success
✅ data.tsv.gz was created and zipped correctly.
✅ metadata.tsv.gz was created and zipped correctly.
Results: PASS
Testing Key Files:
✅ test_data.tsv contains enough unique samples to test
✅ test_data.tsv contains enough test cases (8; min: 8)
✅ test_metadata.tsv contains enough unique samples to test
✅ test_metadata.tsv contains enough test cases (8; min: 8)
Results: PASS
First 5 columns and 5 rows of data.tsv.gz:
| Sample | 1/2-SBSRNA4 | A1BG | A1BG-AS1 | A1CF |
|---|---|---|---|---|
| TCGA-06-0675-11A-32R-A36H-07 | 48 | 206 | 87 | 8 |
| TCGA-06-0678-11A-32R-A36H-07 | 25 | 112 | 44 | 2 |
| TCGA-06-0680-11A-32R-A36H-07 | 36 | 223 | 122 | 5 |
| TCGA-06-0681-11A-41R-A36H-07 | 28 | 361 | 120 | 1 |
Columns: 23369 Rows: 742
“data.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
Results: PASS
First 3 columns and 5 rows of metadata.tsv.gz:
| Sample | Variable | Value |
|---|---|---|
| TCGA-06-0675-11A-32R-A36H-07 | Cancer_Type | Glioblastoma multiforme |
| TCGA-06-0678-11A-32R-A36H-07 | Cancer_Type | Glioblastoma multiforme |
| TCGA-06-0680-11A-32R-A36H-07 | Cancer_Type | Glioblastoma multiforme |
| TCGA-06-0681-11A-41R-A36H-07 | Cancer_Type | Glioblastoma multiforme |
Columns: 3 Rows: 742
“metadata.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
Results: PASS
Comparing samples in both files . . .
✅ Samples are the same in both “data.tsv.gz” & “metadata.tsv.gz”