LINCS_PhaseII_Level5
Status: Complete
Testing Directory . . .
Results: PASS
Testing Configuration File . . .
✅ config.yaml contains all necessary configurations.
✅ Title is less than 100 characters
✅ description.md contains a description.
Results: PASS
Running Install . . .
Executing install.sh: Success
Results: PASS
Testing file paths:
✅ test_data.tsv exists.
✅ test_metadata.tsv exists.
✅ download.sh exists.
✅ install.sh exists.
✅ parse.sh exists.
✅ cleanup.sh exists.
✅ description.md exists.
✅ config.yaml exists.
Running user code . . .
Executing download.sh: Success
Executing parse.sh: Success
✅ data.tsv.gz was created and zipped correctly.
✅ metadata.tsv.gz was created and zipped correctly.
Results: PASS
Testing Key Files:
✅ test_data.tsv contains enough unique samples to test
✅ test_data.tsv contains enough test cases (14; min: 8)
✅ test_metadata.tsv contains enough unique samples to test
✅ test_metadata.tsv contains enough test cases (42; min: 8)
Results: PASS
First 5 columns and 5 rows of data.tsv.gz:
| Sample | DDR1 | PAX8 | GUCA1A | EPHB3 |
|---|---|---|---|---|
| REP.A001_A375_24H:A03 | 4.26414251328 | 0.0572491958737 | -1.01247990131 | 0.308898389339 |
| REP.A001_A375_24H:A04 | -0.382210791111 | 0.304313182831 | -0.674991726875 | -0.335931241512 |
| REP.A001_A375_24H:A05 | -0.571710944176 | -0.754998862743 | 0.414515376091 | -0.502323210239 |
| REP.A001_A375_24H:A06 | 0.584376096725 | -0.589973151684 | -0.227603152394 | -1.7752468586 |
Columns: 12329 Rows: 118051
“data.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
✅ Row 10: Success
✅ Row 11: Success
✅ Row 12: Success
✅ Row 13: Success
✅ Row 14: Success
Results: PASS
First 3 columns and 5 rows of metadata.tsv.gz:
| Sample | Variable | Value |
|---|---|---|
| LJP005_A375_24H:A03 | pert_id | DMSO |
| LJP005_A375_24H:A03 | distil_cc_q75 | 0.37 |
| LJP005_A375_24H:A03 | distil_ss | 2.45357 |
| LJP005_A375_24H:A03 | tas | 0.150663 |
Columns: 3 Rows: 2891271
“metadata.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
✅ Row 10: Success
✅ Row 11: Success
✅ Row 12: Success
✅ Row 13: Success
✅ Row 14: Success
✅ Row 15: Success
✅ Row 16: Success
✅ Row 17: Success
✅ Row 18: Success
✅ Row 19: Success
✅ Row 20: Success
✅ Row 21: Success
✅ Row 22: Success
✅ Row 23: Success
✅ Row 24: Success
✅ Row 25: Success
✅ Row 26: Success
✅ Row 27: Success
✅ Row 28: Success
✅ Row 29: Success
✅ Row 30: Success
✅ Row 31: Success
✅ Row 32: Success
✅ Row 33: Success
✅ Row 34: Success
✅ Row 35: Success
✅ Row 36: Success
✅ Row 37: Success
✅ Row 38: Success
✅ Row 39: Success
✅ Row 40: Success
✅ Row 41: Success
✅ Row 42: Success
Results: PASS
Comparing samples in both files . . .
✅ Samples are the same in both “data.tsv.gz” & “metadata.tsv.gz”