LINCS_PhaseI_Level5
Status: Failed
Testing Directory . . .
Results: PASS
Testing Configuration File . . .
✅ config.yaml contains all necessary configurations.
✅ Title is less than 300 characters
✅ description.md contains a description.
Results: PASS
Running Install . . .
Executing install.sh: Success
Results: PASS
Testing file paths:
✅ test_data.tsv exists.
✅ test_metadata.tsv exists.
✅ download.sh exists.
✅ install.sh exists.
✅ parse.sh exists.
✅ cleanup.sh exists.
✅ description.md exists.
✅ config.yaml exists.
Running user code . . .
Executing download.sh: Success
Executing parse.sh: Success
✅ data.tsv.gz was created and zipped correctly.
✅ metadata.tsv.gz was created and zipped correctly.
Results: PASS
Testing Key Files:
✅ test_data.tsv contains enough unique samples to test
✅ test_data.tsv contains enough test cases (12; min: 8)
✅ test_metadata.tsv contains enough unique samples to test
✅ test_metadata.tsv contains enough test cases (40; min: 8)
Results: PASS
First 5 columns and 5 rows of data.tsv.gz:
| Sample | PSME1 | ATF1 | RHEB | FOXO3 |
|---|---|---|---|---|
| CPC005_A375_6H:BRD-A85280935-003-01-7:10 | 0.77376896143 | -0.818468034267 | 0.189572289586 | -0.146030768752 |
| CPC005_A375_6H:BRD-A07824748-001-02-6:10 | -0.645586133003 | -0.810748696327 | 0.459060251713 | -0.224676460028 |
| CPC004_A375_6H:BRD-K20482099-001-01-1:10 | -5.44966554642 | 2.39377498627 | 1.27978992462 | 2.16786789894 |
| CPC005_A375_6H:BRD-K62929068-001-03-3:10 | 0.193407714367 | -0.582243263721 | -0.178976982832 | -1.18202459812 |
Columns: 12329 Rows: 473648
“data.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
✅ Row 10: Success
✅ Row 11: Success
✅ Row 12: Success
Results: PASS
First 3 columns and 5 rows of metadata.tsv.gz:
| Sample | Variable | Value |
|---|---|---|
| AML001_CD34_24H:A05 | pert_id | DMSO |
| AML001_CD34_24H:A05 | distil_cc_q75 | -666.0 |
| AML001_CD34_24H:A05 | distil_ss | 4.78894 |
| AML001_CD34_24H:A05 | ngenes_modulated_up_lm | 35 |
Columns: 3 Rows: 14244671
“metadata.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
⚠ The value for variable "donor_ethnicity" for all samples is the same ("Caucasian"). This variable has been removed from metadata.tsv.gz
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
✅ Row 10: Success
✅ Row 11: Success
✅ Row 12: Success
✅ Row 13: Success
✅ Row 14: Success
✅ Row 15: Success
✅ Row 16: Success
✅ Row 17: Success
✅ Row 18: Success
✅ Row 19: Success
✅ Row 20: Success
✅ Row 21: Success
✅ Row 22: Success
✅ Row 23: Success
✅ Row 24: Success
✅ Row 25: Success
✅ Row 26: Success
✅ Row 27: Success
✅ Row 28: Success
✅ Row 29: Success
✅ Row 30: Success
✅ Row 31: Success
✅ Row 32: Success
✅ Row 33: Success
✅ Row 34: Success
✅ Row 35: Success
✅ Row 36: Success
✅ Row 37: Success
✅ Row 38: Success
✅ Row 39: Success
❌ Row 40: Fail
- “TAK004_U2OS_96H:TRCN0000381509:1 tas_q75 0.288657” is not found.
Results: FAIL
Comparing samples in both files . . .
✅ Samples are the same in both “data.tsv.gz” & “metadata.tsv.gz”