UCSF_Weiss_CTDD
Status: Complete
Testing Directory . . .
Results: PASS
Testing Configuration File . . .
✅ config.yaml contains all necessary configurations.
✅ Title is less than 100 characters
✅ description.md contains a description.
Results: PASS
Running Install . . .
Executing install.sh: Success
Results: PASS
Testing file paths:
✅ test_data.tsv exists.
✅ test_metadata.tsv exists.
✅ download.sh exists.
✅ install.sh exists.
✅ parse.sh exists.
✅ cleanup.sh exists.
✅ description.md exists.
✅ config.yaml exists.
Running user code . . .
Executing download.sh: Success
Executing parse.sh: Success
✅ data.tsv.gz was created and zipped correctly.
✅ metadata.tsv.gz was created and zipped correctly.
Results: PASS
Testing Key Files:
✅ test_data.tsv contains enough unique samples to test
✅ test_data.tsv contains enough test cases (11; min: 8)
✅ test_metadata.tsv contains enough unique samples to test
✅ test_metadata.tsv contains enough test cases (9; min: 8)
Results: PASS
First 5 columns and 5 rows of data.tsv.gz:
| Sample | 0610007C21Rik | 0610007L01Rik | 0610007P08Rik | 0610007P14Rik |
|---|---|---|---|---|
| RU109_1355 | 9.1900 | 8.3670 | 6.2000 | 8.9890 |
| RU109_1358 | 8.8340 | 8.5230 | 5.9945 | 9.3620 |
| RU109_1359 | 9.1900 | 8.2750 | 5.9500 | 8.9350 |
| RU109_1361 | 9.1380 | 8.3780 | 5.8920 | 8.8210 |
Columns: 19341 Rows: 21
“data.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
✅ Row 10: Success
✅ Row 11: Success
Results: PASS
First 3 columns and 5 rows of metadata.tsv.gz:
| Sample | Variable | Value |
|---|---|---|
| RU109_1355 | Sex | M |
| RU109_1355 | Germline Hras1 status | Hras1-/- |
| RU109_1355 | Color | agouti (tan) |
| RU109_1358 | Sex | M |
Columns: 3 Rows: 1201
“metadata.tsv.gz” Test Cases (from rows in test file). . .
✅ First column of file is titled “Sample”
✅ Row 1: Success
✅ Row 2: Success
✅ Row 3: Success
✅ Row 4: Success
✅ Row 5: Success
✅ Row 6: Success
✅ Row 7: Success
✅ Row 8: Success
✅ Row 9: Success
Results: PASS
Comparing samples in both files . . .
✅ Samples are the same in both “data.tsv.gz” & “metadata.tsv.gz”